Herrania nitida

Organism Details
Common Name Cocoa out-group
Genus Herrania
Species nitida
Abbreviation H.nitida
Cocoa is a fruit tree that has particular economic importance for the humid tropical countries where it is cultivated. After fermentation, drying and roasting, the beans are used to make chocolate. Cocoa is often cultivated under a forest canopy and in small plantations, which also means that it helps maintain biodiversity and respect the environment.

Life span Perennial
Mating system Allogamy
Number of chromosomes 2n = 20
Sequenced accession

Downloads

The following files are available for download:

Herrania nitida (GFF3 format) KB1_Herrania.gff
Herrania nitida (FASTA format) Abyss_Cap3_KB1_250.fasta


Functional annotations

Blast vs UniProt SwissProt (XML format) KB1_SP.xml
Blast vs UniProt TrEMBLE (XML format) KB1_TR.xml
Blast vs NCBI nr (XML format) KB1_NR.xml
Blast vs nt (XML format) KB1_NT.xml
Blast vs Arabidopsis Thaliana (XML format) KB1_arabido.xml
Blast vs Rice (XML format) KB1_rice.xml
Blast2Go Abyss_Cap3_KB1_250.4b2g.xml.annot
Prot4EST KB1_translations_xtn.fsa
KB1_translations_noxtn.fsa
Data Type Summary
The following data types are currently present for this organism
Feature Type Count
gene 19,811
CDS 19,811
three_prime_UTR 17,666
five_prime_UTR 15,646
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature Name Unique Name Type
Contig10128 Contig10128 gene
Contig10129 Contig10129 gene
Contig1013 Contig1013 gene
Contig10130 Contig10130 gene
Contig10131 Contig10131 gene
Contig10132 Contig10132 gene
Contig10133 Contig10133 gene
Contig10134 Contig10134 gene
Contig10135 Contig10135 gene
Contig10136 Contig10136 gene
Resources