Empogona ruandensis-tricolysia

Organism Details
Common Name Coffee out-group
Genus Empogona
Species ruandensis-tricolysia
Abbreviation E.ruandensis-tricolysia
Coffee is the world's leading agricultural resource in value terms. It is a major source of revenue for more than 40 tropical countries, and generates more than 120 million jobs. Coffee is grown on more than 10 million hectares worldwide, primarily on small family farms (70% of the crop comes from farms of under 5 hectares). Two species, Coffea arabica (65%) and Coffea canephora (35%), are cultivated.

Life span Perennial
Mating system Allogamy
Number of chromosomes
Sequenced accession

Downloads

The following files are available for download:

Empogona ruandensis-tricolysia (GFF3 format) CB1_Empogona.gff
Empogona ruandensis-tricolysia (FASTA format) Abyss_Cap3_CB1_250.fasta


Functional annotations

Blast vs UniProt SwissProt (XML format) CB1_SP.xml
Blast vs UniProt TrEMBLE (XML format) CB1_TR.xml
Blast vs NCBI nr (XML format) CB1_NR.xml
Blast vs nt (XML format) CB1_NT.xml
Blast vs Arabidopsis Thaliana (XML format) CB1_arabido.xml
Blast vs Rice (XML format) CB1_rice.xml
Blast2Go Abyss_Cap3_CB1_250.4b2g.xml.annot
Prot4EST CB1_translations_xtn.fsa
CB1_translations_noxtn.fsa
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature Name Unique Name Type
Contig1063 Contig1063 gene
Contig1064 Contig1064 gene
Contig1065 Contig1065 gene
Contig1066 Contig1066 gene
Contig1067 Contig1067 gene
Contig1069 Contig1069 gene
Contig107 Contig107 gene
Contig1070 Contig1070 gene
Contig1071 Contig1071 gene
Contig1072 Contig1072 gene
Resources