Theobroma speciosum

Organism Details
Common Name Cocoa out-group
Genus Theobroma
Species speciosum
Abbreviation T.speciosum
Cocoa is a fruit tree that has particular economic importance for the humid tropical countries where it is cultivated. After fermentation, drying and roasting, the beans are used to make chocolate. Cocoa is often cultivated under a forest canopy and in small plantations, which also means that it helps maintain biodiversity and respect the environment.

Life span Perennial
Mating system Allogamy
Number of chromosomes 2n = 20
Sequenced accession

Downloads

The following files are available for download:

Theobroma speciosum (GFF3 format) KB2_theodromaSpeciosum.gff
Theobroma speciosum (FASTA format) Abyss_Cap3_KB2_250.fasta


Functional annotations

Blast vs UniProt SwissProt (XML format) KB2_SP.xml
Blast vs UniProt TrEMBLE (XML format) KB2_TR.xml
Blast vs NCBI nr (XML format) KB2_NR.xml
Blast vs nt (XML format) KB2_NT.xml
Blast vs Arabidopsis Thaliana (XML format) KB2_arabido.xml
Blast vs Rice (XML format) KB2_rice.xml
Blast2Go Abyss_Cap3_KB2_250.4b2g.xml.annot
Prot4EST KB2_translations_xtn.fsa
KB2_translations_noxtn.fsa
Data Type Summary
The following data types are currently present for this organism
Feature Type Count
gene 22,440
CDS 22,440
three_prime_UTR 20,278
five_prime_UTR 18,388
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature Name Unique Name Type
singlet__99560 singlet__99560 gene
singlet__99617 singlet__99617 gene
singlet__99690 singlet__99690 gene
singlet__99715 singlet__99715 gene
singlet__99760 singlet__99760 gene
singlet__99787 singlet__99787 gene
singlet__99821 singlet__99821 gene
singlet__99834 singlet__99834 gene
singlet__99843 singlet__99843 gene
singlet__99845 singlet__99845 gene
Resources